rs37894562 SNP Detail

Summary

• ID
  rs37894562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11261111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCGAAAGC GTCTAGATAC
  AGGCATCTAT ATATGCAAAA ATGTACACAC AGCTTCATCC CTACATATAG ACAGGCACAT
  AAGCATACGT ATACCATGTG AGCATACATG TGCAATGAAC ACATTCTCAA TTATGTTCAA
  GGAAGAAAAG ATGTGTTAAT TTTTTAGCGC AGTATCTCAC AAAGCCTTTC TTTGTAGAGT
  Y
  GGAGGCCATC GTTTTATAAG CAGTCACTAT CTGACAGTGG CAATCAGGGC ATGTGATGGA
  GTCTACGGTC ACAGCTTGTG TGACAGACCA CAGACATCTG CAGACCGTGT GCCCTTTCTA
  TTCACCCATT AGGTGAGTAG GATTCTGTTG TAGCCATGGT ATGTGGGAGC TGCTAGCATC
  CAGGAGAGGT TTGCTGACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51941307	NES14960053	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	T	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37894562					SNP	T	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51941307	NES14960053	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11261111 () rs orientation: forward

Symbol	Name	Function Class
Col4a1	collagen, type IV, alpha 1	within coordinates
Tssr80369	transcription start site region 80369	462 bp downstream