rs37894563 SNP Detail

Summary

• ID
  rs37894563
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:3717789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGGGGA GACCTGAAAG
  CAAATTTAGA TTTAATTGAG AAACATGTTC TTTTTTAGTA GTGAAGAGAG TAGAACAGAA
  AATTAATGAA CTTCTCTAGG TTTGACTTGG CTTGATTGTT AATGGGCCTC TGTTCTTCCT
  ACCGACCCTT GTGTTTACCC TGTGCCAAAA TACACTTTTC CTTTTCAAGT CCACTCTAAC
  Y
  GGCTTAAGTG AGAATGATTT AGTGCAAGAT ATTTAGGGAG TGATCAAGGA ATCAAGCACA
  GATGTTCCAA GGCCTGAAGC AATGCAGCTG GACCCAGAGG CCTCATTACT ACCTGTTAAG
  CTGCAGGAGT ACAGCAGAGA TGGACAGGGT ACTGCAGTCC TTGTCAGCAT CCCAGGAAGA
  GCAAAGCACA AGCTGGGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51223087	NES14299562	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37894563					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51223087	NES14299562	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:3717789 () rs orientation: forward

Symbol	Name	Function Class
Gm19938	predicted gene, 19938	within coordinates
Xkr4	X-linked Kx blood group related 4	within coordinates