rs37897233 SNP Detail

Summary

• ID
  rs37897233
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149151002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGAAGTC AATTGAGTCC
  TTTCTGCTAC TGTATACATA CAGCAGTTCT GCAATAAGGG GAGAGATAGA ATGGGAGGAG
  CGGCTGTGAA CGAGTGACCT CCTCAGGCTG AGTCCTCTCC GGGAACCACA CACTGACAAC
  CAGTTTCTGA TTTGCATGGA TTATCTCCAC TTGACCAGAT CCTCCGCAGA TACATTTAAA
  W
  GGAGCTGGTA CAATGGTTAA AATGATGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA AACAGACACG AGATCGCAGA GCGTGGATAA GCTGGGGCGT GCAGAATTGT
  GTCTCAGAAG AGCTACAGCT CCCTCTTCAT GCCACAGTTG TAAGATAAGA AATGTTGTCA
  TTACGAGCTG GTTAATCATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51052120	NES13892921	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	T	A	T	A	A	A		A	A	T		A
ss321019004	CHEV_3_149108329	CHEVERUD	SCREENING_POP	f	SNP											A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37897233					SNP	T	A	A	A	T	A	T	A	A	A	A	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052120	NES13892921	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149151002 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	within coordinates
Gm30382	predicted gene, 30382	within coordinates
Rr398127	regulatory region 398127	158 bp upstream
Rr587324	regulatory region 587324	264 bp distal
Rr587325	regulatory region 587325	within coordinates
Tssr36100	transcription start site region 36100	121 bp upstream
Tssr36101	transcription start site region 36101	100 bp upstream
Tssr36102	transcription start site region 36102	87 bp upstream
Tssr36103	transcription start site region 36103	within coordinates
Tssr36104	transcription start site region 36104	11 bp downstream
Tssr36105	transcription start site region 36105	88 bp downstream