rs37898279 SNP Detail

Summary

• ID
  rs37898279
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5845475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAAGTTC TGACCTCCAA
  ACACACGCAG TGCACACTTA CACACAGTAT TGCATACACT CTGGGAATGT TTTTGGGCCT
  TTAGACCATG TATAACTATT TCCCTAAACT ACATGAAAAC TAGTCTTCCA TCCAGTGTTA
  GGAACAGAGG AGCAATGCAC ACCACCTCTT TTCGACACCA TCTTTTCCCA ACTTCCTCAT
  R
  GACAATCCAG AATGTTTTCT CAGGGAGGAG AGCCTGAACA GCAGGGAAAG GCCTTGTGTT
  CCTGAGGTGC AAGAGTGGCC ACCTAGGACC CAAGCCCAAC TTTAGAGCCA TCTGCATGAA
  AGAGCCATGC AGCCCAAGGA AACAGGGAAG GCCTCACTAA TCGGAGAAGC TGAGGTAGAT
  CAGACATTTG GTCTCTTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50577518	NES13649150	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37898279					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577518	NES13649150	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5845475 () rs orientation: forward

Symbol	Name	Function Class
Malat1	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	243 bp downstream
Mascrna	Malat1-associated small cytoplasmic RNA	477 bp downstream
Rr543158	regulatory region 543158	1915 bp distal
Rr543159	regulatory region 543159	1802 bp distal
Rr543160	regulatory region 543160	1029 bp distal
Tssr5415	transcription start site region 5415	1387 bp downstream
Tssr5416	transcription start site region 5416	1863 bp downstream
Tssr157645	transcription start site region 157645	906 bp downstream
Tssr157646	transcription start site region 157646	936 bp downstream
Tssr157647	transcription start site region 157647	1098 bp downstream
Tssr157648	transcription start site region 157648	1264 bp downstream
Tssr157649	transcription start site region 157649	1364 bp downstream
Tssr157650	transcription start site region 157650	1423 bp downstream
Tssr157651	transcription start site region 157651	1477 bp downstream
Tssr157652	transcription start site region 157652	1614 bp downstream
Tssr157653	transcription start site region 157653	1731 bp downstream
Tssr157654	transcription start site region 157654	1774 bp downstream
Tssr157655	transcription start site region 157655	1811 bp downstream
Tssr157656	transcription start site region 157656	1841 bp downstream
Tssr157657	transcription start site region 157657	1963 bp downstream