rs37899472 SNP Detail

Summary

• ID
  rs37899472
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92422595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCCATAA TACAGAGTTC
  CACAGTTTGG GTACAGGAAG CAGCCACAGG AAAGTTGGCC AGTGATAAAA AGCTTGAACC
  AGGGCATCAA GAGGTATGTT ACTTAAGCAG GAAAGAATGA ATGGAAGAAG GCAGAGAAAA
  TGTGAAGAAA AATATAACAG TCCTCTAGGT TGGTGCTAGT GAGAGCAGAG ATTGACAAAA
  M
  TCTGGAGCCA TGTAAGTAAG AGGATCATTA ATGAAGATAA AGAAACTAGG TGTAAGATCT
  GGATTTGATG AGCTAAAGAA GCTGAGTGTT TGCCATGGGA AGTAGATATT TGTGGAGTAG
  ACAACTCCAG CCTACAGGAG GGCTGGAAAC CCGAGAGGGC TGGAAGGATT TGGTTTCAGG
  TTGTTACTGA AGCGTCTGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss52036456	NES15053650	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	A		C	C
ss323074139	CHEV_9_92435380	CHEVERUD	SCREENING_POP	f	SNP						C			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs37899472					SNP	C	A	A	A	A	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52036456	NES15053650	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92422595 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Cpgi22147	CpG island 22147	1315 bp proximal
Gm37545	predicted gene, 37545	459 bp upstream
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	1681 bp upstream
Rr684631	regulatory region 684631	1918 bp distal
Rr684632	regulatory region 684632	1191 bp proximal
Tssr86520	transcription start site region 86520	1713 bp upstream
Tssr86521	transcription start site region 86521	1888 bp upstream