rs37899541 SNP Detail

Summary

• ID
  rs37899541
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45313893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGCACTA AGTCCTTGGT
  TGTCTCTGTG CACTATCCCG GCTTGGGGAC CTTTTGGCTT CTCAGAGGAC CTCATTATGT
  GCCGGAACTC TTGCTGAGAC CTGTAAGTGC ATCCAGGCAG GTGTGACATC ATAAATGACA
  CATGCCCCCA GGGTTAGGTG GGGAGGAGGA AGGACAGGCC ACCAAGGGAG TACCCTCAAA
  M
  CAGCTGTGGC TCCAGCCACT GCCCAGAATG GTTCAGGAGG CTAGTCAGCT GCCTCAAATC
  CAGAACCAAC AGAGACTAGG TCCCCATTGC ATCTGGAACA GTTTCCTGCC TGGTCTCAGG
  GGGGCCTCTG GACTACAGAA TGGGCCCAGG GGCAAGAGAT ATCAGGGTGG GACCTACTGG
  GTGGGAGGGT GAAGAATCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52013367	NES15030352	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	A	A	C	A	A	C	C	A	A	C	A
ss136411195	ENSMUSSNP1587866	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37899541					SNP	C	C	A	A	A	A	A	C	A	A	C	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52013367	NES15030352	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45313893 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr195106	regulatory region 195106	493 bp distal
Rr200381	regulatory region 200381	693 bp distal
Tssr84783	transcription start site region 84783	21 bp downstream
Tssr84784	transcription start site region 84784	20 bp upstream
Tssr84785	transcription start site region 84785	547 bp upstream
Tssr84786	transcription start site region 84786	579 bp upstream
Tssr84787	transcription start site region 84787	601 bp upstream
Tssr84788	transcription start site region 84788	632 bp upstream
Tssr84789	transcription start site region 84789	658 bp upstream