rs37900072 SNP Detail

Summary

• ID
  rs37900072
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103979728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCTGAG TCAGGCAACT
  CTTGTTTTCT ATTTTACACC CCGCCTTTAT CTTGGATCCA AGAGAGCTTT CCTGAAACGT
  AGCCTCCGGA GCCCTTGATT AAGTGCTCTG TAAAACCTTC CTGTGGAGTC CATCCAAATT
  CCTAAATGTC CTGGGATGCA GATGGAGGGA GTTCCAGTCT GGCTCCCAAA CTGCAGGATC
  R
  TCCGTTTCCA CTCAGCTGAA GGGAACAAGA GAGTGCCTGT GGTTCACCAA GCCCTGGTCA
  TCCCAGAGAG AGGCACTGAC CACATCCAGT GCCCATAGGC CCTGCCCAGG GGAGTGGGGC
  TGGGGGTGGG AGTGAGGAGG GAGGGAGGGG GGAGAAGCTC CAGAAATGAG TGACTGAGTT
  ATCTTGTCTA AGAGAGAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50790551	NES14206555	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37900072					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50790551	NES14206555	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103979728 () rs orientation: forward

Symbol	Name	Function Class
Acad11	acyl-Coenzyme A dehydrogenase family, member 11	within coordinates
Ackr4	atypical chemokine receptor 4	within coordinates
Gm46999	predicted gene, 46999	1907 bp upstream
Gm47000	predicted gene, 47000	916 bp downstream
Rr686043	regulatory region 686043	within coordinates
Rr686044	regulatory region 686044	279 bp proximal
Rr686045	regulatory region 686045	480 bp proximal
Tssr2998	transcription start site region 2998	49 bp downstream
Tssr91231	transcription start site region 91231	189 bp upstream
Tssr91232	transcription start site region 91232	166 bp upstream
Tssr91233	transcription start site region 91233	82 bp upstream
Tssr91234	transcription start site region 91234	21 bp downstream
Tssr91235	transcription start site region 91235	472 bp downstream