rs37900690 SNP Detail

Summary

• ID
  rs37900690
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:129957229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCAACAA GGTGGTGGAC
  CTCATGGGCT ACATGGTCTC CAAAGAGTAA GAAACCCTGG ACCACCCACC CCAGCAAGGA
  CACTGAGAGC AAGAGAGAGG TTCTGGGTTG CTAAGGAGTC CCTGTCCCAA CTCGGGCCCC
  AATGCTGAAC ATTTCCCTCA CAATTTCTAT CCCAGACCTT CATAATTATA GAAGGAGCCT
  W
  GGGAGCTCAA ACTATGCTCT TAAACACTAA CAATAAAGTT CACTGGACCC ACAAGAAAAA
  GAAGCAATCA CACCAGTCTA CAGGCAGTGA GAGTCTCCCC ATGCCCAAAT CACACCATTC
  TAGATATATG AGGAATATAG CAATGACAAA CATGAGCAGG CACAGCAGCA CCAAGAAGCA
  ATCTGAAGAT TAAGCCCCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50953116	NES14137399	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		A	T	T	A		T
ss323544203	CHEV_10_129558416	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37900690					SNP	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50953116	NES14137399	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:129957229 () rs orientation: forward

Symbol	Name	Function Class
Gm5181	predicted gene 5181	151 bp downstream