rs37901920 SNP Detail

Summary

• ID
  rs37901920
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4251678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGAGTCCCA GCAGCTACTA CGACTGCCTA AAGTTCCCTT
  CCCGCGCACC GTCCCCTCCC CGCTGCCGGC CTGGCCTCCG CTTCCTTATT GGTTCACCCG
  K
  GGTTTCTCCG TCACGTGAGA AAAACGTTCC TAAGCTCGGT GTCACGTGAT CTAGTCGGTT
  CATTGGGTGT GGCCCGGGTC ACGTGACTGC GGAGGGCTTG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50585408	NES13654362	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37901920					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50585408	NES13654362	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4251678 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10391	CpG island 10391	within coordinates
Gm30082	predicted gene, 30082	29 bp upstream
Rad9a	RAD9 checkpoint clamp component A	17 bp upstream
Rr405788	regulatory region 405788	within coordinates
Rr542669	regulatory region 542669	within coordinates
Rr542670	regulatory region 542670	85 bp proximal
Rr542671	regulatory region 542671	1725 bp proximal
Tssr154297	transcription start site region 154297	118 bp upstream
Tssr157469	transcription start site region 157469	254 bp upstream
Tssr157470	transcription start site region 157470	90 bp upstream
Tssr157471	transcription start site region 157471	56 bp upstream