rs37903334 SNP Detail

Summary

• ID
  rs37903334
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:143280666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGTATTG GGTAAACAAC
  ATTTACTTTT CTCACAGATG GTCGAAATGA CTGATGAAGC CATGGCGCGC CTTTGTTTGG
  GTTGCTCCCT TAGCAAGGTC TGAGATGACA TAGTTTGTTT GGGAGGCGCT CCCTGCAAGC
  AAGATTGGAC ACCTGAGTGG GTCAGAGGAG AGGGAGAGGA GAGGTGTTTT GTTGTGGCTG
  Y
  TGATGGAGGT GATGGTGACT GTATCTTATT GGGGCATTAC AGAAGCAAGT ACAGAAGCAA
  GCAGTCTCCA TGCTGGGATG GTAACTTGCT TTCTGAACTC TCCAAATGCC CCCGTGTGTG
  AGTCAAACAG ACACTGTCTG TGGGAATGGT GTGTTCCTTC TCGGAGGGGT TCCTGTCTGC
  TTTACTCTAG TAAATAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51458626	NES13997516	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	T		C	C	C	C		T
ss322052270	CHEV_6_143283460	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37903334					SNP	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51458626	NES13997516	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:143280666 () rs orientation: forward

Symbol	Name	Function Class
Rr380238	regulatory region 380238	1522 bp upstream