rs37906654 SNP Detail

Summary

• ID
  rs37906654
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:73001924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCAGGCT GGCCTTGAAC
  TCAGAAATCC ACCTGCCTCT GCCTCCCAAG TGCTGGGATT AAAGGCGGGT GCCTCCCCGC
  CCGGCACTTT GAGTTTTGAT ATAATTATGC TTCCCTGTGC ACTGGCTATT GTATTACACC
  AAGAACCCCC CCCCCCCCCC CCATTGTACT GCACTTAAAT AAACCTCCTG GCGTCAGACT
  S
  CAGAAGGAAA CATTTCCTTT CCGGCTGTGA TGCTTGCGCA CACGCCCCTC CACACACACA
  CCTGAAGGTC ATTCTGCTAT TACTTGGCGC TCCTGTAATC GGTCTCCAGG AAACGCCCCG
  CTCAATTCTC TGTGGCAGCT ACTGGTGGTT GCCTAGACGA CACTCCTAGC CCACCCCTCC
  CCTCCTCGTA GAAGTCCAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50746392	NES14237704	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37906654					SNP	G	G	G	G	G	C	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50746392	NES14237704	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:73001924 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22027	CpG island 22027	640 bp proximal
Rab27a	RAB27A, member RAS oncogene family	within coordinates
Rr206717	regulatory region 206717	76 bp proximal
Tssr86085	transcription start site region 86085	672 bp downstream
Tssr86086	transcription start site region 86086	184 bp upstream
Tssr86087	transcription start site region 86087	202 bp upstream
Tssr86088	transcription start site region 86088	1969 bp upstream