rs37907226 SNP Detail

Summary

• ID
  rs37907226
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128176371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTTTCTTC CAGGAAAAAA AAAATGCCCT TTAAGATACA
  CTTAAAAGTT ACAGTTCTAT TAGTCTTTAA GGCACAGATG AGAAATGTCT TGAAAAATAA
  K
  CCCAGAACAG GATGACTCAA GAACACTGGC TTTTCTTCCA GAGGACCTGG GTTCAATTCC
  CATCACCCAC ATGGCAGCTC ATGTCTGTAA CTCCTGTTTC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51863572	NES14892229	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37907226					SNP	T	G	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51863572	NES14892229	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128176371 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18048	CpG island 18048	627 bp proximal
Gm10010	predicted gene 10010	within coordinates
Gm66766	predicted gene, 66766	896 bp upstream
Rr399953	regulatory region 399953	1099 bp upstream
Rr639207	regulatory region 639207	513 bp proximal
Rr639208	regulatory region 639208	907 bp proximal
Rr639209	regulatory region 639209	1164 bp proximal
Rr639210	regulatory region 639210	1311 bp proximal
Tssr63410	transcription start site region 63410	1144 bp downstream
Tssr63411	transcription start site region 63411	1166 bp downstream
Tssr63412	transcription start site region 63412	1168 bp downstream
Tssr63413	transcription start site region 63413	1190 bp downstream
Tssr63414	transcription start site region 63414	1230 bp downstream