rs37907848 SNP Detail

Summary

• ID
  rs37907848
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60194933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTCCACA TGCATGGCGT
  CTAATGAGCA GGACAGTGAC AGTAAGGACT CTCACTGCAG ATCCCCATCC CCCTCTCTGC
  TGCCTCATTT CCCTGTCTTT TCTTGACTGT GGCCTCAGAA GCCCCTCTAC CTGTCACTGA
  TCACTCTGTG AAGCAGGCAT CGCCAGCCAA TCTGCAGAGG GGACACACAT TCACTTCCTA
  R
  TGGCACAGCA GGGACTAGAC TGTAGGTTTT CTGGCAGAGC AGAGGGTGGC TGTCAGCCCT
  GGTGCTGGCC CAGAGAGAAA CCTTATGGGT GAGTTACAGG GCTTGGCTCT CAAGGAAGCT
  GAGGACATAG AGGTTCATTT GAGAATGCCC TATGGCATAT ATATATAGTA GACAAGGGGA
  TATATTTCAC AGTGCCCAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss50866534	NES14171003	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs37907848					SNP	A	A	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50866534	NES14171003	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60194933 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Rr228092	regulatory region 228092	1669 bp proximal
Tssr93621	transcription start site region 93621	1117 bp downstream
Tssr93622	transcription start site region 93622	1033 bp downstream
Tssr93623	transcription start site region 93623	669 bp downstream
Tssr97721	transcription start site region 97721	1054 bp upstream
Tssr97722	transcription start site region 97722	920 bp upstream
Tssr97723	transcription start site region 97723	888 bp upstream
Vsir	V-set immunoregulatory receptor	within coordinates