rs37910139 SNP Detail

Summary

• ID
  rs37910139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101076895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGTTTTT AAGAAAGTGA
  ACAACTTAAC ATCTGAGCAA AGAAATATCA GATACATATG GATGAATGGA ATTTTTACCA
  AACAAGGGCA CAAAAGATGA TCAAACAGAA CACTCTGAGC TTATGAGACT TTTTCCTTTG
  AGGGACGTTA AAGAAATAAA CATATTCCAT AATTTTACCA TATATAAAAT ATTGTCCTCA
  Y
  TTTAATATTT ATGAGCAAAT TACCAAAGTA TTCTCTTATG CATATTTATA TTTCACTATT
  TATTCTTAAT TAATCTCACC AATCAGGATT TATTTTTTTA TTTCTAGAAA ATATAAAACA
  CCATAAAGAA CAAAACTAAA ACCATAAAAG TATATATATG CATATATAAT AAATAAATGT
  AAAAATTAAA ATATTTAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50785723	NES14211500	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		C	T		C
ss323148493	CHEV_9_101102026	CHEVERUD	SCREENING_POP	f	SNP										T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs37910139					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50785723	NES14211500	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101076895 () rs orientation: forward

Symbol	Name	Function Class
Gm67595	predicted gene, 67595	within coordinates
Ppp2r3a	protein phosphatase 2, regulatory subunit B'', alpha	within coordinates
Rr685595	regulatory region 685595	482 bp distal
Rr685596	regulatory region 685596	949 bp proximal
Tssr91107	transcription start site region 91107	742 bp upstream
Tssr91108	transcription start site region 91108	699 bp upstream
Tssr91109	transcription start site region 91109	616 bp upstream
Tssr91110	transcription start site region 91110	608 bp upstream