rs37912739 SNP Detail

Summary

• ID
  rs37912739
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127586152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTGTGCT CCTATGCAGG
  AGTAAGGGTG ATCAGCTTTT GCAGCAAGCC AATGCTTTGG TTCACATCCT CTTATGAGGC
  AGTGCAGGCA GCCACACTTC CCTCCTTAAC AGTGGTGTGG GGTCCAGGTT CACAGCTCGC
  TGGCTATAGC ACATGCATCT GAGCCCCCTC CTTCTCTTAA CTTCTATAGT TTGCAAAGTA
  W
  AACTGTGAAC CCTGGAAGGG AGGCAGTTTG TGGAGTGCTA AGAGACAGTG CCTTGGGGTC
  TGGACCCTGG CCTTGGCACC TTGTTTTGGA GCGGAACCCA CTCTTTACAT TCTACCTAGC
  TCCATCTCTC TCACCTGTAA AGGGGTCGTT CATGGAGCTA TTCTGAAGAT GAGCTGGGAT
  GGCACAAGCA AAGGACCCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51618275	NES14659890	PERLEGEN	MM_PANEL2	f	SNP	A		A	T	A	T	A	T	T	T	T		T	T	T	A		T
ss135871407	ENSMUSSNP6326376	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss320956938	CHEV_3_127495421	CHEVERUD	SCREENING_POP	f	SNP												T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37912739					SNP	A	A	A	T	A	T	A	T	T	T	T	T	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51618275	NES14659890	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127586152 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13801	CpG island 13801	1554 bp distal
Gm65225	predicted gene, 65225	within coordinates
Rr398007	regulatory region 398007	1034 bp upstream
Rr584863	regulatory region 584863	1689 bp distal
Rr584864	regulatory region 584864	within coordinates
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31605	transcription start site region 31605	1864 bp downstream
Tssr31606	transcription start site region 31606	1678 bp downstream
Tssr31607	transcription start site region 31607	1454 bp downstream
Tssr31608	transcription start site region 31608	1358 bp downstream
Tssr31609	transcription start site region 31609	1319 bp downstream
Tssr31610	transcription start site region 31610	1226 bp downstream
Tssr31611	transcription start site region 31611	1113 bp downstream