rs37923083 SNP Detail

Summary

• ID
  rs37923083
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142945868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCTCTAAG GCTACTTCCT
  GGTACACCCT GGACCCTCCC TCCATCCTGA AGGGATCATT ATCTTAAACC TGGTCCTTCC
  CATCGACTGG GTTTGGGGGT AGGGGTGTTT CAGGATGGCC TCAGAGAGCA GGAGAAAGTT
  GGAGATCAGC CAACTACTGC AGAGCACGAC TGTGGAGGAA CAGTTAAATG GACTAGCAAA
  Y
  ACGAACGGGC CAGAGGCAGA AGGACTGCTA TGAGTTCGAG TCCAGCCTGA GCCACACAGA
  TACTTCAAGC CTAGTCTGAG TTACAGAGTG AAACCCGGTC TTAAACCCCA GAAAAACACT
  CCGGGGAAGC GCAGGGGACC GGGCGCGCGC TGCAGAGCCC CCTCCCCGGC AGGCCCGGGT
  AGGGGCGTGG CCACGGTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51533820	NES14872373	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37923083					SNP	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533820	NES14872373	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142945868 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16967	CpG island 16967	within coordinates
Cpgi16968	CpG island 16968	1686 bp proximal
Fscn1	fascin actin-bundling protein 1	242 bp upstream
Rr378736	regulatory region 378736	84 bp upstream
Rr624074	regulatory region 624074	within coordinates
Rr624075	regulatory region 624075	1711 bp proximal
Tssr49613	transcription start site region 49613	235 bp upstream
Tssr49614	transcription start site region 49614	364 bp upstream
Tssr49615	transcription start site region 49615	845 bp upstream
Tssr49616	transcription start site region 49616	887 bp upstream
Tssr49617	transcription start site region 49617	1075 bp upstream