rs37924345 SNP Detail

Summary

• ID
  rs37924345
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45828665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCAAGTT TGTTACTTCA
  TTTCACCAGT CTGATGAGGA AGAAGAGGAG GAAGAGAACG ATGGTGGCAT TTTAAATTAT
  TTGTTTACTT TTCTCTTACA GGTACTGTAA AAGCTACTAC TTTGGGGAAG TAATATATTT
  AGCTATGTTT GTTATTTTCC ACAGTAAAAT ATCAGTGATA GAGAAAATGT ATGTGAATAA
  S
  ATAAGTCTTT TCTGGAAACC TCAACTGTCA TTAAGATAAA AGGATAACTC CAGCATTAAA
  AATTTAACTT TAAATTCTCA CTTTTGGTGT AAATGTCCTC TCTCTGCGAT TAAGTTAAAG
  AAATTCTATA GAGAGGGATA GGCTTATTTT GTGACAGCAA ATAGTTTTTC AGCCTATTTG
  AGAGTATAAC ATCTGCCTCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51715721	NES14748565	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37924345					SNP	G	G	G	G	G	G	C	G	G	G	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51715721	NES14748565	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45828665 () rs orientation: forward

Symbol	Name	Function Class
1600023N17Rik	RIKEN cDNA 1600023N17 gene	1615 bp upstream
Cpgi15841	CpG island 15841	827 bp distal
Ncapg	non-SMC condensin I complex, subunit G	within coordinates
Rr367838	regulatory region 367838	1440 bp downstream
Tssr46141	transcription start site region 46141	1422 bp downstream
Tssr46142	transcription start site region 46142	1378 bp downstream
Tssr46143	transcription start site region 46143	1317 bp downstream
Tssr46144	transcription start site region 46144	1079 bp downstream