rs37926957 SNP Detail

Summary

• ID
  rs37926957
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140702566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGCTTC TTCATAGCTG
  AGAAAAGGCC ACTCTGTATT CTGCTCCCTA GGAACAGAGG TGAGGACTTT TGCAGCCTTC
  GGACGAGATG AAGGTGACAC ACAGGTGCGA ACCTACAAGC GGAGGGAACG CCTGCAGATT
  CCTGAAGTTC TGGTAGAAGC TTCGCGTTCC TGTGAAGTGT TAGGAGTAGA GATCCTTAAA
  Y
  TTAGCGCTGT TCAGCATCTC TGTTCCTAAA CAAGATGCAA AAATAAAACT CAAGAGTTGT
  GAAACTGGGG GCTGGTGAGA TGGCTCAGTG GGTAAGAGCA CCCGACTGCT CTTCCGAAGG
  TCCAGAGTTC AAATCCCAGC AACCACATGG TGGCTCACAA CCATCTGAAA TGAGATCTGA
  CTCCCTCTTC TGGAGTGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50482345	NES14107148	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37926957					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50482345	NES14107148	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140702566 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19919	CpG island 19919	300 bp proximal
Gm33560	predicted gene, 33560	578 bp upstream
Gm73068	predicted gene, 73068	827 bp upstream
Gm73077	predicted gene, 73077	within coordinates
Rr400707	regulatory region 400707	377 bp upstream
Rr657849	regulatory region 657849	626 bp distal
Rr657850	regulatory region 657850	1277 bp distal
Rr657851	regulatory region 657851	177 bp proximal
Rr657852	regulatory region 657852	337 bp proximal
Rr657853	regulatory region 657853	911 bp proximal