rs37927402 SNP Detail

Summary

• ID
  rs37927402
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97806544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCTACT CCAGAGATAA
  TGTAGCCCCT AGGATGGAGC TCTGGCATGA CCTTCAATAA CCCCAGCCTG GTCCTCACTC
  AGGATCTAAC AGGTTGGACC ATTGGACCCG TCTTTTCTCC TGGGTGAAGC GTTTCAGACA
  ACTTCCCTTA AGTAAGTTTC CTTATATAGA GTGTTTTTGC TCAATGTCTT TTGCCAGCTC
  Y
  AGACTGTTTT TGGTCTGAGG TGGAAGTTCT AATTTGTTTA CTGATGTTTT CAGAGCCTTT
  GCTCCTTGAG GTGTGCTCTC TTCTGACGCC CTCACTCTCT CCTTTCGTTT ACCACCAGCA
  CACATTTGTT CTTCTGTCTC CACTCCCATC TCTAGTAGCT AGTTGCTGGG CTTTAGGCTC
  TCATTACCTC TTGTTTGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51375319	NES13725674	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37927402					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51375319	NES13725674	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97806544 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Tssr57872	transcription start site region 57872	1334 bp downstream
Tssr57873	transcription start site region 57873	1288 bp downstream
Tssr57874	transcription start site region 57874	1271 bp downstream
Tssr57875	transcription start site region 57875	1251 bp downstream
Tssr57876	transcription start site region 57876	1221 bp downstream
Tssr57877	transcription start site region 57877	280 bp downstream
Tssr57878	transcription start site region 57878	267 bp downstream
Tssr57879	transcription start site region 57879	237 bp downstream
Tssr57880	transcription start site region 57880	190 bp downstream
Tssr57881	transcription start site region 57881	7 bp downstream
Tssr57882	transcription start site region 57882	88 bp upstream
Tssr57883	transcription start site region 57883	1364 bp upstream
Tssr57884	transcription start site region 57884	1748 bp upstream