rs37932371 SNP Detail

Summary

• ID
  rs37932371
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114270760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTATAGTT AGTGCTAGTT
  TATCTCAGTC TATTGAGTGT AGGCAACGCA GGACTGGAAA AGTGAGGTTA TTTCTGCTCA
  CAAGATGTGT TGGGAAAATT GTGGCCCCCA TATACTAATA ATCTCAGCAC CTGAAGGTTG
  GAGCCCAGCC TGGGCCACTT GAGACCCTGA TTCAATAATA CAGAAGTCAA AAACAAGGGC
  K
  GTTGTATTTT GCACAGACTA GAAGGGATGG CCTGCAGGTA CTAGATTCAG GTTGCCTACC
  TAGCTTGTGT CACTTCCCTG CATGAACGAC CATCCAACCG AGTGGCTCAT TCTGACCCAC
  GGGTGACTTG AGTCCCTTGG TTAGCTCTGT CTTCCTTGTC ATGGCTTCTT TGTCTTCCTC
  ATCCAGTCTT TCTCAGAGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51798678	NES14715479	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37932371					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51798678	NES14715479	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114270760 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16310	CpG island 16310	845 bp distal
Gm73235	predicted gene, 73235	within coordinates
Gm73237	predicted gene, 73237	1985 bp upstream
Tssr48058	transcription start site region 48058	1521 bp downstream
Tssr48059	transcription start site region 48059	1479 bp downstream
Tssr48060	transcription start site region 48060	470 bp downstream
Tssr52695	transcription start site region 52695	1973 bp upstream
Tssr52696	transcription start site region 52696	1102 bp upstream
Ung	uracil DNA glycosylase	within coordinates