rs37935416 SNP Detail

Summary

• ID
  rs37935416
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49025446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTATTCCT TTATAGAATG
  TTTTAAATTG TAAAATAGTT AATCCACATT TCTTACTAAA AGTTGGAACT AACCAGGGAG
  AAGCCTAGCA TAGAAGGAAA AGTCCCCATG TTCTCTCTTC CCCAGTTCAT CCTGGCGTTG
  CTGGCCACGT CTCTGCGCAG ATCATTCTCT ATGCACCTGG CGTTGCTGGC CACGTTTCTG
  Y
  GCAGATCATT CTCTATGCAT TTACAAACAT CCTATGTGGT CTGTCATTTT GGATGTTATG
  TAAATGGGTT CACATCATGT GCTGTGTTCT TTGCCCCTCT TTGCTAAATA ACCACAGAAA
  GCTTTCAGTT ACTGTGCATG GAAATCTCTC ACACCTGACC GGGTGTCGCA CAGTGTCACA
  GGGTGTACTG ATAAACACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss51658455	NES14824141	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs37935416					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51658455	NES14824141	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49025446 () rs orientation: forward

Symbol	Name	Function Class
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56341	transcription start site region 56341	1791 bp downstream
Tssr56342	transcription start site region 56342	1759 bp downstream
Tssr56343	transcription start site region 56343	1213 bp downstream
Tssr56344	transcription start site region 56344	1189 bp downstream
Tssr56345	transcription start site region 56345	1170 bp downstream
Tssr56346	transcription start site region 56346	1117 bp downstream
Tssr56347	transcription start site region 56347	1099 bp downstream
Tssr56348	transcription start site region 56348	1076 bp downstream
Tssr56349	transcription start site region 56349	755 bp downstream
Tssr56350	transcription start site region 56350	726 bp downstream
Tssr56351	transcription start site region 56351	699 bp downstream
Tssr56352	transcription start site region 56352	680 bp downstream
Tssr56353	transcription start site region 56353	612 bp downstream
Tssr56354	transcription start site region 56354	598 bp downstream
Tssr56355	transcription start site region 56355	574 bp downstream
Tssr56356	transcription start site region 56356	556 bp downstream
Tssr56357	transcription start site region 56357	544 bp downstream
Tssr56358	transcription start site region 56358	526 bp downstream
Tssr56359	transcription start site region 56359	495 bp downstream
Tssr56360	transcription start site region 56360	448 bp downstream
Tssr56361	transcription start site region 56361	1370 bp upstream
Tssr56362	transcription start site region 56362	1598 bp upstream
Tssr56363	transcription start site region 56363	1885 bp upstream
Tssr60849	transcription start site region 60849	1150 bp upstream
Tssr60850	transcription start site region 60850	1097 bp upstream
Tssr60851	transcription start site region 60851	635 bp upstream
Tssr60852	transcription start site region 60852	606 bp upstream
Tssr60853	transcription start site region 60853	594 bp upstream
Tssr60854	transcription start site region 60854	577 bp upstream
Tssr60855	transcription start site region 60855	532 bp upstream
Tssr60856	transcription start site region 60856	505 bp upstream
Tssr60857	transcription start site region 60857	404 bp upstream
Tssr60858	transcription start site region 60858	1927 bp downstream
Tssr60859	transcription start site region 60859	1969 bp downstream
Tssr60860	transcription start site region 60860	1983 bp downstream