rs37938950 SNP Detail

Summary

• ID
  rs37938950
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129206098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTTGACT TGATCTTCTG
  TAGCAGGTTT GCATAGCACC TGATACTTAG TTCTAGGTGC CATTGTTTAA GCCCCCCTCC
  CCCATGTTGG TTCCCAGCTA GGAACATACA CCTGAATTTC TAGTTGCTAC TCTATACAGA
  CTTGCATAAT TGATGGTAGG AGGCAGGCAT GTGATTCTGA TTTTGCAGAG AAACAGCACA
  S
  CATTCTTGAA TCAAAGAGGG GGTAAACAAG GACTTCAAAG GAAAACATGC AAGGCCAGTG
  TGAGGCAGGG CTCGAATCTG GGGTTTACAG AGGCAAAAAT GACAGTTTAA ATTCCAGAGA
  TGCAATTGCT TTAAATAACT TTGAATCTCT AAAGGGGTTT TCTCAGGGTA ACAACTGTAG
  GTTACACCAG CGTCTGGAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss51418741	NES13704009	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs37938950					SNP	C	C	C	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51418741	NES13704009	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129206098 () rs orientation: forward

Symbol	Name	Function Class
Gm38906	predicted gene, 38906	1372 bp downstream
Gm47861	predicted gene, 47861	within coordinates
Rr399972	regulatory region 399972	192 bp upstream
Tssr59119	transcription start site region 59119	241 bp upstream
Tssr59120	transcription start site region 59120	260 bp upstream
Tssr59121	transcription start site region 59121	1367 bp upstream
Tssr59122	transcription start site region 59122	1401 bp upstream
Tssr59123	transcription start site region 59123	1460 bp upstream
Tssr63549	transcription start site region 63549	16 bp upstream
Tssr63550	transcription start site region 63550	102 bp downstream
Tssr63551	transcription start site region 63551	1127 bp downstream