rs37940449 SNP Detail

Summary

• ID
  rs37940449
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19917512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACGGGCAA CCTTCTCCCA
  AACAAGCTGC TGTTTGGAAA TGCGATTCTT TTGGAGTTCC GCCCTCTGCT AATGTAGCTT
  CTACAGAGGG TTGGCTTCTC CCAAAGGCCC CATCTTCTTT CACGAGCAGT CTCACCCCCT
  GTCCTGACCT TGGCTGTCCT AAGACATTGA AACATACTGT GAAAGAAGTG TAAACTTAGC
  W
  CCACAGAAAG ATAAAAGGGA CCGATACACC TTCAATGGTT GTAGACACAC ACCTGCCTTG
  AATCATACCA AGATTCAGCT ACAGAAACTA AAATAATGGA AATGTTATTG TCTAGCAACC
  TCATTATGGC CTACATTTGA GCATCGGTGA GACTATTTTC AAATTGCTTT TGAAAAGATA
  AGCATCACCT GTACCTGTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51072293	NES14365089	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37940449					SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51072293	NES14365089	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19917512 () rs orientation: forward

Symbol	Name	Function Class
Gpr141b	G protein-coupled receptor 141B	391 bp upstream
Tssr121608	transcription start site region 121608	587 bp upstream
Tssr121609	transcription start site region 121609	527 bp upstream
Tssr121610	transcription start site region 121610	388 bp upstream