rs37941206 SNP Detail

Summary

• ID
  rs37941206
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128811341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGTCCCT CACTCCACAG
  CTGCCATCCC TCCCACTGCT GTCCCTTCAG GACCTGATTG TTCTCGCAGG AAATATGTGA
  ATGGCAGTCT CTTGCGTTAC GGCACCATCT AGTGGTGCCG TTGTGGAACA GCTTGCTTGT
  CACCCGTGGA AGAGTTTGAG CTGTTTTTCA GATTGTGACT TCTAGGGCTT ACAAAGTGAA
  S
  GCTCTGGGTC TATAATCCCA TCATTTTGGT GGCAGAGACA GGAGGATCAT TGCAGGTTCG
  AGGCCAACCT GGTCTACGTA GCAAGTTTAA AACCAACCAG AGACCCTATC TCAAAGAAAT
  AAAAATAAAA ATAAAGGAAA AAGGAAAAAA AAAAAAAGAG CCATCAAGAT GAATCTATGT
  GTTCTTCAAA CCTTCAAACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51843745	NES14705208	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37941206					SNP	G	G	G	G	G	G	C	G	G	G	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843745	NES14705208	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128811341 () rs orientation: forward

Symbol	Name	Function Class
4930553I04Rik	RIKEN cDNA 4930553I04 gene	1083 bp downstream
Cpgi16665	CpG island 16665	1571 bp proximal
Gm71554	predicted gene, 71554	1075 bp downstream
Piwil1	piwi-like RNA-mediated gene silencing 1	1794 bp upstream
Tssr1644	transcription start site region 1644	1883 bp upstream
Tssr48983	transcription start site region 48983	1809 bp upstream
Tssr48984	transcription start site region 48984	1848 bp upstream
Tssr48985	transcription start site region 48985	1891 bp upstream
Tssr48986	transcription start site region 48986	1965 bp upstream
Tssr53471	transcription start site region 53471	1734 bp downstream