rs37941596 SNP Detail

Summary

• ID
  rs37941596
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83687767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGAAACTCG CGGGATCCCC
  ACAATAAGTG GCTGTTCTGT GTGCCTGAGT GTGAGTGCCT TGGTTGGGGG ACGCGTGCCC
  TGAACCCCAG ACCTACACCC CACTCTCTAC CGTCGCCCCC ACCGCACCAA GTTCCGGAGC
  CCAGCAAACC TCCTCTTTTC TGCCGGGTCG AGTCAGGGTC GCCTCCTCGA GCTCTGAGTT
  W
  TCCATCAAGC GGAGCCAGAC TGAAAGCTAG GTGCATTTCC CTGGAGATAT AGGGAACAGA
  GGGAAGAGGG CGAGAGGGAC CAATGGGTAG GGAGTAATAA AGTTTATGAG AGGGTGTGGG
  GCGGTCTTCT GTACCACGGG GCTGTCCAGT CTCCCATTGC CAGGCTCTAA ACACCGCCCC
  ACGCGAGGAG GCGCGAAGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss51352655	NES13742490	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs37941596					SNP	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51352655	NES13742490	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83687767 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17611	CpG island 17611	within coordinates
Gm55235	predicted gene, 55235	within coordinates
Rr632917	regulatory region 632917	within coordinates
Rr632918	regulatory region 632918	260 bp distal
Rr632919	regulatory region 632919	137 bp proximal
Rr632920	regulatory region 632920	1406 bp proximal
Tssr57361	transcription start site region 57361	447 bp upstream
Tssr61702	transcription start site region 61702	65 bp downstream
Vax2	ventral anterior homeobox 2	479 bp upstream
Vax2os	ventral anterior homeobox 2, opposite strand	within coordinates