rs37941607 SNP Detail

Summary

• ID
  rs37941607
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38219264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGTACAG TAAAAAAAAC
  TCTGCAGTTC ATAATGAGAA GTCCAAAGCC TTGGGAATAA AATTTTCATT TCCTGGGAGG
  CACACTGGGT TCCCCAGGAG TTGCTGACAA TGGGCCTTCA GTCAGATGGC CCTGACTTAG
  GGAGGCTAAG TCTGGAACTG CTGGAGGCCA CCTAGCTGGA GGAGATAACA AGGCCAGAAC
  W
  GAGCTGGTTT CCAAAATTCT TTGGTCTCAG CAATTACAAT GAAACTAGGT TAACAACCAA
  TCAGAATTGT ACTAATGTTA CTGCGTTGCC CCCCTATTGG AGGTTACCTA ATCCTTCTGG
  AAAATTCTCT TAGCCCTCCA TTAAAGGGGT CCATGAGCCC CTCAGGTGGT TGCCGTTTTG
  ATAAATGGTT GGCCCCTGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51098411	NES14356944	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37941607					SNP	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51098411	NES14356944	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38219264 () rs orientation: forward

Symbol	Name	Function Class
Cage1	cancer antigen 1	within coordinates
Cpgi5461	CpG island 5461	1316 bp proximal
Riok1	RIO kinase 1	1707 bp upstream
Rr271618	regulatory region 271618	1664 bp distal
Rr281252	regulatory region 281252	736 bp proximal
Tssr119342	transcription start site region 119342	1947 bp upstream
Tssr122123	transcription start site region 122123	1602 bp downstream
Tssr122124	transcription start site region 122124	1637 bp downstream
Tssr122125	transcription start site region 122125	1795 bp downstream
Tssr122126	transcription start site region 122126	1877 bp downstream