rs37946166 SNP Detail

Summary

• ID
  rs37946166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:15338138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTAAGTGTA GTATGAACAT
  CTCGCTTTTA GGTAAGAGCT ATTGGCTTGG TTCCTGGTTC TCACAATGTG CCCCTCATAC
  TAAGAATTAT TGGCATCACT GGGAAGTGTC TTTACTCTAT AACCGGTGTT ACAGTTACGA
  GATCAGAATA TGAAGCATAG TAAGAATTCT TGGAAAATCA TGGGTACACT GGATTTCTGC
  R
  AATGTAGGTA TAGAGAAACA TGAGACCTCG AGCAAGAGCA AAGTCAATCT CATGACATTC
  CTCAAGCCAT CCACCTTGTT TACTGAGGCC AAGTCTCTCA CTGTTTGGTG CTCACTAACT
  AACTGTTCTG GCTGGCTGAG GAGCAAGTTT CAGGAGTTCT CCTCTTTTAG CCTTCCCAAG
  CTGGGGTTAT AAGCATGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50645668	NES13624026	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37946166					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50645668	NES13624026	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:15338138 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10647	CpG island 10647	1575 bp proximal
Pomc-ps1	pro-opiomelanocortin, pseudogene 1	1561 bp upstream