rs37947048 SNP Detail

Summary

• ID
  rs37947048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8439496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTAACCGT CAACAGTGCC
  AATAAGGGGT GAGGACACTA ACAGTGTAAC TGGTGACCAC GTGAACAGTT CCATGAATTA
  AATGTTTCCT GTGTTAATCA GTATTCTTAA ATTAAAAGAA AATGTTTATA ATGGAAATGT
  CAGAGTGAAT GTGGGCTTTT TCTGGAGGTT GCATTAATTC TCAGAAATGT CAATTCACCC
  R
  AGATGGTACA ATGGCACAGT AAGGATGGAT TCCACCCAAG GCCAGCCTGG TGAGCCAGTG
  AACTTAGAGG TACTGTGAAG AGCATGGGGG ACTCACACAG ATGCATTCCT TGATAGCCCA
  CTTGAGCATG GGCAACAATC TGAAAGCTGT TCATCGAAGC TCCACCAATG TGGCCCCTCC
  TTGAGCAAGG GTTTATGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51776940	NES14544632	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37947048					SNP	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51776940	NES14544632	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8439496 () rs orientation: forward

Symbol	Name	Function Class
Abat	4-aminobutyrate aminotransferase	64 bp downstream
Gm7541	predicted gene 7541	1554 bp downstream
Gm9851	predicted gene 9851	414 bp upstream
Gm55031	predicted gene, 55031	1531 bp downstream
Rr511288	regulatory region 511288	1370 bp distal
Rr511289	regulatory region 511289	883 bp distal
Tssr136998	transcription start site region 136998	1821 bp downstream