rs37951568 SNP Detail

Summary

• ID
  rs37951568
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12570046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTTTTT TTTTTTTTTT
  TTTTTTTTTT TTTAAGCTGA GGGTCTGGTG AAAGAAACTG ACAAGTGTAA GAAGATAAGA
  AGCTCATGTT TAGTTTTCAG CAACTACTTT AAGGAAGTGA CAATTCAAAA ACAAGAAAAG
  AGGTATAGAT GGGAACCAAC AGTCCTATCC CCTGATTAGT GAGAAATGAA CAGGTTTTCA
  Y
  AGACCACAGT CTCACGTGTC CCCTGATTAG TGTCAGACCG ATTTGCTCAA GGATTCAGAC
  AAAGGAACAT GAGATAAGTA AAATGTAGCT GGGTCATCTT GCTCAGCCTT CCTATTTTTC
  TGTCACTGTA GAAGAGGAAA ACCCTGGACT GAACTGCATC TTGTGCCTTT CAGGAGTCTG
  TGAAGTTTGA AGATGTATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51469408	NES13983778	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37951568					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51469408	NES13983778	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12570046 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18318	CpG island 18318	700 bp distal
Rr642383	regulatory region 642383	1348 bp distal
Rr642384	regulatory region 642384	1173 bp distal
Rr642385	regulatory region 642385	626 bp distal
Rr642386	regulatory region 642386	272 bp distal
Tssr64479	transcription start site region 64479	1308 bp downstream
Tssr64480	transcription start site region 64480	1067 bp downstream
Tssr64481	transcription start site region 64481	858 bp downstream
Tssr64482	transcription start site region 64482	165 bp downstream
Zfp110	zinc finger protein 110	within coordinates