rs37952004 SNP Detail

Summary

• ID
  rs37952004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113305912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCATGAAAA ATTTAAAATG ACCATTTAAT TGACACTTGG
  CAAATGCCTG TTTACAGCAC CTCCAAACTC ATTGAAGCAT CATGCAAATG TTTGAACCCA
  Y
  GGTCAAGGAG ACTGGAAATT TACTACCAAG TGTTCTATGT AACATGTACC TGTGCTCTAA
  TGATGAATGT TAAAATATAA CCCTTGTAAA AGACCTACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50461181	NES14120800	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C		C	C		C	T		C
ss145681405	ENSMUSSNP3908890	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C			T
ss322423819	CHEV_7_120850189	CHEVERUD	SCREENING_POP	f	SNP									C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37952004					SNP	C	C	C	C	C	T	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50461181	NES14120800	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113305912 () rs orientation: forward

Symbol	Name	Function Class
Gm5600	predicted gene 5600	within coordinates
Gm71809	predicted gene, 71809	within coordinates
Rr152955	regulatory region 152955	312 bp distal
Rr163207	regulatory region 163207	975 bp proximal