rs37960068 SNP Detail

Summary

• ID
  rs37960068
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92424603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCCTCCG CTCCAGCCCC
  GGGCTCACGT CTGGTCCTGC GCTCTTCGGG GTCTCAGCGT CTCGCGAGAA GTCCTCGCCA
  CAGGCCTTCG GCTCCCGGGT TCAGGGGCGG ATGGGGGACC GCGGAGCGAG GCCGGGGCGG
  CTGATGCCCA TGCTCGCCCT GCTCTCCTGG GCGGCCGGCC TGGGCGTGGC GGAGGAGACG
  Y
  CCGGGCGCAT CCCTGCAGGT GAGCTCTGCT TGCTGGTTTC CACCGGCGGT CTAGAGAGAA
  CTGGGCATGT TTCCTCTTTG CTTGCTCCAT CCCTGCGGGA CCTAGCCGCG GGGCTCCCTG
  CTTTGAGATT GGCAGGGACC TCCTTTCCTG CGCCCCGGGA AGCAGCTTGC CATCCTGCCT
  CTGTCTACAC GCAGCGCTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	NZW/LacJ	PWD/PhJ
ss52036446	NES15053661	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	NZW/LacJ	PWD/PhJ
rs37960068					SNP	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52036446	NES15053661	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92424603 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Cpgi22147	CpG island 22147	within coordinates
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	within coordinates
Rr684632	regulatory region 684632	276 bp distal
Rr684633	regulatory region 684633	368 bp proximal
Rr684634	regulatory region 684634	495 bp proximal
Tssr86520	transcription start site region 86520	278 bp downstream
Tssr86521	transcription start site region 86521	111 bp downstream