rs37962946 SNP Detail

Summary

• ID
  rs37962946
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11349543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTTCCCC TTAGTAGATA
  GTACAGCATT TCCCACTCTG GATATGGAGT TTCAACAGAA AAAAAAAAAT AGCCATCTTT
  TCCCCCCAGT ACCTGAATAG TCAGTCATGG TGCCCTGTCT ACTTGGGAAA TGGTACCATT
  GTTGATTCAA GCAGTTGTCC TCTCCTCCTG GAGCATTGGA GGGCTGGCTG AGATGTATTC
  W
  CTGATCTCCA TGTTACAGGC CCATCAAGGG CAAACTCTTC CCTTCTGATC AAGAGAAATG
  GAATCCCTGA AGTGGTTGGA GACAAAATGT CTGAGTTGCA CAGATCAATT CCCTAGCTAA
  TGGACTATTC CTCAGAAAAG TATAACTTTT CTGTCCAGAA GAGTATACTC TTCTGTTCAT
  TTTGCAGTTG TTGGGCAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50596002	NES13637769	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37962946					SNP	T	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50596002	NES13637769	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11349543 () rs orientation: forward

Symbol	Name	Function Class
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Rr544325	regulatory region 544325	726 bp distal
Tssr155162	transcription start site region 155162	352 bp upstream
Tssr155163	transcription start site region 155163	362 bp upstream
Tssr155164	transcription start site region 155164	384 bp upstream
Tssr155165	transcription start site region 155165	478 bp upstream
Tssr155166	transcription start site region 155166	516 bp upstream
Tssr158339	transcription start site region 158339	63 bp downstream
Tssr158340	transcription start site region 158340	170 bp downstream
Tssr158341	transcription start site region 158341	197 bp downstream
Tssr158342	transcription start site region 158342	746 bp downstream