rs37964927 SNP Detail

Summary

• ID
  rs37964927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:35517568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTTTTGA CAGAATATAT
  ACATTTATGT GAACCAATGT GTGCGAGTGC CCGAAGAGGC AAGAGGAAGC ATAAAATCTG
  AGAGAGCTAG AGATACAGAC AGCGGTGAGC CTTCATATGG GCCATGCTGG GAACCAAGCC
  GGGCTCCTCT GCGAGAGCAG CCAGTGCTCT TAACCTCTGA GCCATCTCTG CAGCAGTGCT
  Y
  GGGTCTTGTG TTGAGCTCTC TGAACCCACT TAGCGCTTCC TGTTGAGTGC ATACGTGTGG
  GACCTACTGG TTTGTTTTAC CTTTAGGCAT CAAACTCTAT TCCTATTCTC ATACATCAGT
  GGCTGGGTGG GGCTCTCTCC CTTGGTCTTT TCTCCTCTCT CTCCCACTAC CACTCTTGGC
  CTTTCTTCTC CCTTTCCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51601158	NES14847474	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37964927					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51601158	NES14847474	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:35517568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17298	CpG island 17298	569 bp distal
Gm68014	predicted gene, 68014	within coordinates
Mtpn	myotrophin	745 bp upstream
Rr146138	regulatory region 146138	368 bp distal
Rr399612	regulatory region 399612	575 bp downstream
Tssr60313	transcription start site region 60313	915 bp upstream
Tssr60314	transcription start site region 60314	873 bp upstream
Tssr60315	transcription start site region 60315	810 bp upstream