rs37965927 SNP Detail

Summary

• ID
  rs37965927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134805050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGAGGA GAGGAGGAGA
  GGAGAGGAGA GGAGAGGAGA GGAGAGGAGA GGAGAGGAGA GGAGAGGAGA GGCGATAATT
  TACAGAAGTC AGTTCTGTCC TTCCATCATG TGGTTCCCAG GGATCAAGCT CAGACCACCA
  GGCCTGGCAA CAAATGCCTT TACCTACTGA GCCCTACCTC TCTGGTCCCT ACTCAGGCTT
  Y
  TGTTTCCTTA ACCATTGGAA AGGACACTAG GTGTCCCTTT CGTCACTGGG AACGCCAGCT
  GGGATGATCA CAGTAGGGCC AGCCTGCCAG ACCTGTTTGT AATCTTAGGG TCTGAGTATG
  AGGTACCACC ACGGGGAAAA GTGATTGGGC TCTAGTTCTC CTGACTTCAG ACACCTCCAA
  TACAGAACAC TCAACCTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51438879	NES14009641	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37965927					SNP	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51438879	NES14009641	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134805050 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18077	CpG island 18077	1842 bp proximal
Gm67917	predicted gene, 67917	854 bp downstream
Rr368197	regulatory region 368197	1798 bp upstream
Rr639725	regulatory region 639725	1659 bp distal
Rr639726	regulatory region 639726	328 bp proximal
Rr639727	regulatory region 639727	418 bp proximal
Rr639728	regulatory region 639728	959 bp proximal
Rr639729	regulatory region 639729	1998 bp proximal