rs37967253 SNP Detail

Summary

• ID
  rs37967253
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:52519894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGCTGTA GGTGGTAGGT
  GGCTGAGGGT GGCTGGCAGC CATGGGCAGT GGGTAGTACC TGACACTCTA TAAGCTCATT
  TGTTGAGGAC AGCTACTGCC AACAGCAGAT AAAAAGTTCA GGGCTGAACT GGCTTCTAGG
  GGACGCCACC TGAAGGAGGT TCACTGAGCT CCAGGAGGCA CGCAGAGAAC AGGTTACCGA
  R
  CAAACTTCCC ACCTGCCAGG CCTGGCGACT GGAGGTGTCA GGGGCCATTC TGTCTCTAGC
  TGTACCACTG ATGCTCGGTT ATCTTCCTAA GTGTGTGAAC CACATGGGGC AGAAACTTGT
  GCAGCTTGGA GACTCTGGTG TGTGGTGTGG TAGGGGGCAG GTACCCAATA ACCATTTGTC
  AAAGGAATTC AGGGGACAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51118318	NES13854572	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	A	A		A	A	G
ss148439991	ENSMUSSNP4800423	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37967253					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51118318	NES13854572	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52519894 () rs orientation: forward

Symbol	Name	Function Class
Rr611419	regulatory region 611419	1349 bp distal
Rr611420	regulatory region 611420	834 bp proximal
Rr611421	regulatory region 611421	1250 bp proximal
Sod3	superoxide dismutase 3, extracellular	1252 bp upstream
Tssr46168	transcription start site region 46168	1360 bp upstream
Tssr46169	transcription start site region 46169	1373 bp upstream
Tssr46170	transcription start site region 46170	1404 bp upstream