rs37972423 SNP Detail

Summary

• ID
  rs37972423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:49594905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGTCTCTT TTGGATTGTT
  TGTACTTGTT CTACCCAGTG CTCCCCCCCC CGCCCCCCCC CGTACAGTGA TCTTTGAGCG
  TTTTGTGTTG TATGTTTTTC TCAAAATGTA TTTGATACAC AAGTATCCCT TTAAAGCAAG
  CATGACATCA TATTACATGT GCTGCTTTGT CAGCTGAGTA AGCGCTGATA GGTGCTAGTC
  Y
  GTCTTTTGGA GTGGCTGTAT TCACACTCAT TCACCCCTTC ATGGCGTGTG GCCTGCCGAG
  TAAGTGAGCA TCCTTTCCTC CTGCAGTAAA TATCTTAGTA TCTGCAGCAA AAGCCATGCC
  CCCATCCCTG TTGCCTCTTC GCTCTGTGTA GTGCTTTTAG ATTCCTTTAG GTTTTCTCAG
  TTGGGTCGTG TATACATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51106143	NES14353453	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37972423					SNP	C	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51106143	NES14353453	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:49594905 () rs orientation: forward

Symbol	Name	Function Class
Ippk	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	within coordinates
Rr276357	regulatory region 276357	1705 bp distal
Rr276358	regulatory region 276358	1496 bp proximal
Rr279502	regulatory region 279502	1424 bp distal
Rr279503	regulatory region 279503	within coordinates