rs37973720 SNP Detail

Summary

• ID
  rs37973720
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:139014341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATACCTT TGGCTAATGT
  TTTAATCACG GCAGTAGAAA CCAAACTAGG CCACTCACTG AAAGATTAGA GCATGTCTCA
  TTAGGGAGGG ATTTAGGGAT GCTACTAAGG TAAGCCATGG AAGGAATCGT TTCTTTTGGT
  AGCTTTGCTT TGATGTCCTG TGGGTCCAGG ATATTGTCAC TGGGGAAGAA AGTAGCCGCC
  R
  CTGTTCTCAG TATGCTCCTT CTCAGCACAT TGAGATTTCT TCTGCCAGCA GTTTCCTGGA
  GTGGCCACTA CAGCTCAGTA TGGTGTATGG CTTACAAATG GTGCCACACT GCCAGCTTTC
  TTTTACACTG GCTAACCTCC GTTATTAACA AGTTTTGAAA TAGTCCCATC ATGTAAAACT
  TCTCACATGC ACCCTTGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51042020	NES13901092	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37973720					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51042020	NES13901092	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:139014341 () rs orientation: forward

Symbol	Name	Function Class
Rr586258	regulatory region 586258	150 bp distal
Stpg2	sperm tail PG rich repeat containing 2	Intron