rs37976741 SNP Detail

Summary

• ID
  rs37976741
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12768898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGGTACAG GTCCCACCCA AGCCAGCCTC ACAGGCCCAT
  GGCGGGAGCA CAGCTCGACT GGCTATTCAT TCTGGAAGGC CCATACTCCA CCCACTTTTG
  R
  GCAGTTAATA AATGGCATTT TAGCAAGTGC TTGGCTCGAA CCAAATTAGG CCCACACATG
  GCATAAAGGG GCAAGCCTGG AAATGACTTG TAGGCTCCCT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51468884	NES13983763	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37976741					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51468884	NES13983763	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12768898 () rs orientation: forward

Symbol	Name	Function Class
Chmp2a	charged multivesicular body protein 2A	194 bp upstream
Cpgi18334	CpG island 18334	within coordinates
Rr368233	regulatory region 368233	27 bp downstream
Tssr64534	transcription start site region 64534	92 bp downstream
Tssr70642	transcription start site region 70642	1006 bp upstream
Tssr70643	transcription start site region 70643	935 bp upstream
Tssr70644	transcription start site region 70644	825 bp upstream
Tssr70645	transcription start site region 70645	557 bp upstream
Tssr70646	transcription start site region 70646	298 bp upstream
Tssr70647	transcription start site region 70647	257 bp upstream
Tssr70648	transcription start site region 70648	189 bp upstream
Tssr70649	transcription start site region 70649	482 bp downstream
Tssr70650	transcription start site region 70650	501 bp downstream
Tssr70651	transcription start site region 70651	1653 bp downstream
Ube2m	ubiquitin-conjugating enzyme E2M	149 bp downstream