rs37977253 SNP Detail

Summary

• ID
  rs37977253
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:123828423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACATAAAT AAAATAAATC
  TTAAAAAAAA AGGAGAAGAA AAAAAAGAAA AGAGGGTTTA AGTTGCTCAA AAAGCATTGA
  AATTGCTATT GTCCTGTCTC ATTTTCTAGA TGAATTATGA TTATGGTCCT GTGATATCTG
  GCCCGGGTAT AATGTGGATT TTTAAATTTA TAGCCCTCTT AATTACTGAG CCATTTCTAC
  R
  GCTTCTGTAG TGGAATTTTG ATCAGGAAGA AACCTGGTAA TTGGGAATGA GGAGTGAAAA
  AAGGTTATAG GCATACAGGT GTAGGACCAG TGTATGCCTT GGCTGTTTTG TTGTCGCTGC
  TACTGTGGGT AGGAATTCAG TATTGTATTT CGTCACACCT GATTTCCCCC CGAGGAGTTA
  AGTCAGGGCT AAAGGAGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50631651	NES14029316	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37977253					SNP	G	A	A	A	G	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50631651	NES14029316	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:123828423 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21239	CpG island 21239	450 bp proximal
Rpl13	ribosomal protein L13	666 bp upstream
Rr382749	regulatory region 382749	669 bp downstream
Rr672353	regulatory region 672353	988 bp distal
Rr672354	regulatory region 672354	222 bp distal
Rr672355	regulatory region 672355	176 bp proximal
Snord68	small nucleolar RNA, C/D box 68	1374 bp upstream
Tssr79911	transcription start site region 79911	660 bp upstream
Tssr79912	transcription start site region 79912	675 bp upstream
Tssr79913	transcription start site region 79913	747 bp upstream
Tssr83335	transcription start site region 83335	576 bp downstream