rs37978105 SNP Detail

Summary

• ID
  rs37978105
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:188755470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCGTAAGA CAATGCCAGA
  GTCTGATCGA CTGTTCATGC AGGCTGCTCA GTCTTCATGG GCCTGTGACA TCATCAAACT
  ATCCAGGTGC ACACAAGTAC ACATGCAAGG AAGAGAGCCA TGCCCAGAGT ATTAGTGTCC
  TCTGAGATTA AGACATACCA AATACTTAAC AGATATACAT CTTGCTTTTA CCTGGAGAAA
  Y
  TGCTTCTTTG GGAAGCAGGC CATACCTGAG AATAAATTTT TGGAAGCCTG AAAACTGAGC
  GCAAAAAGAA AGTATAACTT TTAGTGAATA GGACACTATT TACTTAGTGA ATATAAAACA
  GCCACATTTT TAGAAAACAT GATCGTCTAA GTGAATTCCT TAGCTTGGCC ACTAGATGGC
  AACATTCTTT CAAAATTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51419686	NES14448858	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37978105					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51419686	NES14448858	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188755470 () rs orientation: forward

Symbol	Name	Function Class
Rr372621	regulatory region 372621	1716 bp upstream
Rr425741	regulatory region 425741	55 bp proximal
Rr425742	regulatory region 425742	165 bp proximal