rs37982609 SNP Detail

Summary

• ID
  rs37982609
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128072377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGCCAGC CCTGCTTAGA
  GGATGAGAAG TCAGAGGCAG AGAAGCCAAA CTCCCAGCGC AGCATCCAGC CTGGCTGGCA
  TTCACGCACA TTTGCCATGC CCGTGCACGT GCTTTGCCAA AGCTTACCGA ATCAGAGTGT
  TTCCTCCTGA AATATGTACA GCAGCCCCAG GAGGGAGGTG CAGCTAGTGT GCGCAGCTTC
  R
  GGCAGCCAAG CTAAAGCAAC CGCAGTGTCC CCAACATCCA GCACACAGAG CATCTGAGAT
  GCTGGTTTTC ACCCTAGGCA GTCAGTCCCC TCTCCCACTT TGTCATCACC ACTGGGAAGT
  GGGGACAGCA CAGGCTTAGC CAAGTTCTGC ACTGCGATCT GCAAGTGACC CTCCCTATTA
  CTTGCTATTG GAGTGCCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51863756	NES14893025	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37982609					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51863756	NES14893025	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128072377 () rs orientation: forward

Symbol	Name	Function Class
Gm55163	predicted gene, 55163	388 bp upstream
Rr639181	regulatory region 639181	within coordinates
Rr639182	regulatory region 639182	3 bp distal
Tspan9	tetraspanin 9	within coordinates