rs37985854 SNP Detail

Summary

• ID
  rs37985854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42772402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACCCTCCG TGAGCCCTTT
  GGTCACTGCC ATTCCAAACA TCTCCAGCTT AGAAGTGGGT TCTGTTTCTC CTACCACCCA
  TGCACACACT ATGGCTGCCT GGTTCTCCAT GCCTTCTGCC CATGCATACC CTAGACAGCC
  CCTGGCTCGG TGAAGAGCTG GGTCCTTCTG TCATGTCTTC CCAACTGTCT GTCAGTCTTC
  R
  TGCTCAACAT CTGGGCATTC GACCTATTTC CTCTTTTGTG TTGGGGGTAG GGCAGGGGTG
  GGGGTAAATA AGGCAATGCA TCTTTATCCT AAAGTCCTCA GCGCCTAGCT TGGTACCTGA
  GCCCTTAGTA AGAGCTCATT CAACAAAACG GGTGTGGGAG CAAGAAAGGG TTGGAAGAGA
  TGGAGATGTC CTGACCTACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52008982	NES15031330	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37985854					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52008982	NES15031330	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42772402 () rs orientation: forward

Symbol	Name	Function Class
Gm55338	predicted gene, 55338	945 bp downstream
Gm67530	predicted gene, 67530	within coordinates
Grik4	glutamate receptor, ionotropic, kainate 4	within coordinates
Rr383275	regulatory region 383275	1665 bp downstream
Rr677285	regulatory region 677285	532 bp distal
Rr677286	regulatory region 677286	200 bp proximal