rs37986640 SNP Detail

Summary

• ID
  rs37986640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149149881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCCATAT GTCAAAATGC
  AAAATCATAT TAACAAAGAG TATGTTCAAA GACAGATGAC ATTTATCTCC GTTGCAACTG
  GAATGTTCTA ATTATATTTG TACTAATTCA AAAGATTTTT TTGAATTTGT AATTTCATGA
  CATTTTGATG TGATTTAAAG TTAAAATGAC TATGGAATGA TTAAAATATT ATTACAAGTC
  R
  CTTCAAGGAA ACACAGTTGA AGTATTACAA GCTAAGGGAT TGCTTTCAGA AATAAGACGT
  ATATTGTACA ATCTATTAAC CACTTCCACA CATTTTTAAA CCGAATATAA CCATTTGACT
  ATTGAAATCA TTCTTAAATA ACGATCTCCA CTGTGCTATA TACATGGCAG GGTTTAAAGA
  GCCCCTTTAC AGTAAAGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51052140	NES13892899	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A	G	A	A	A		A	A	G		A
ss136071434	ENSMUSSNP5377802	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss321018997	CHEV_3_149107208	CHEVERUD	SCREENING_POP	f	SNP												A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37986640					SNP	G	G	A	A	A	G	A	G	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052140	NES13892899	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149149881 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	within coordinates
Gm30382	predicted gene, 30382	within coordinates
Rr398127	regulatory region 398127	1279 bp upstream
Rr587324	regulatory region 587324	539 bp proximal
Rr587325	regulatory region 587325	938 bp proximal
Tssr36100	transcription start site region 36100	942 bp downstream
Tssr36101	transcription start site region 36101	1009 bp downstream
Tssr36102	transcription start site region 36102	1023 bp downstream
Tssr36103	transcription start site region 36103	1107 bp downstream
Tssr36104	transcription start site region 36104	1132 bp downstream
Tssr36105	transcription start site region 36105	1209 bp downstream