rs37986960 SNP Detail

Summary

• ID
  rs37986960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:10981474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTGTTG CATTTTAAAG
  GCTGAAAAAA GTTTCTAACT CAAAATTGTA ACTGTCCGTA AAACTGACAG CTGACAAACC
  AAACTGACTT CTAAAACTCT CCCATTTAAC CTGAGATGAA TAATTCTGAT ATCCCAGACT
  CTTCTAAATG CTGGGATTAT CCGCGTGCAC AACACCGGCG TTTTAAGCGG TGCTGGACTC
  Y
  GCGCACGGAT TTAGCAACTG GTCTACACCC CTGGCCCTAT GGGCATCTAG GAGAGGTTTC
  AAACAGTTGC AGGATGACAA CTAGTTTTCA GGGCGGCGAG GGAGACACCC AGTGGTTGCC
  TTCTTACATT GATCTAAGGA GTTGAGTGCC TTTAATCACT TACTGGGGGG TGAGGGTAGC
  GATTCAGGTG GCTCGATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51577120	NES14605688	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37986960					SNP	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51577120	NES14605688	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:10981474 () rs orientation: forward

Symbol	Name	Function Class
Amacr	alpha-methylacyl-CoA racemase	401 bp upstream
C1qtnf3	C1q and tumor necrosis factor related protein 3	1238 bp downstream
Cpgi6946	CpG island 6946	within coordinates
Gm34315	predicted gene, 34315	within coordinates
Rr301970	regulatory region 301970	1274 bp distal
Rr311562	regulatory region 311562	within coordinates
Tssr130700	transcription start site region 130700	359 bp upstream
Tssr130701	transcription start site region 130701	392 bp upstream