rs37986989 SNP Detail

Summary

• ID
  rs37986989
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:24685886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGGCGGG GCCGAGCGGC
  GCAGGGAGAG AGCGCCTAGG GCACTGCGCC CTCCTGCCTC TGCGCTCCCG GTGGAGAGCC
  GGAGAAGACG CACAGTGAAC AGGGTGGCGG AGCTAGCCGG ACCGCCTCCG CCCAGAGTCT
  CAGATCCCGC AGGAGGGAAG CATGCGCTGT CTAGAGAGGC ACTTTCACTG CTACCCAGAA
  M
  CAGGCATTTG CGTTGCTCTG GACTGAATGT CACCAAAGGA AGTCCTACTG AGTTCCGCAT
  TTTCTACCTT TCCTACTGGA GCTCCCAAAT AGTTGAGAAG GGCCCAGTAG AGCAAATTCC
  TCATCGCTGA GCGGCATTAA CCTGGTGACG CAGCACAGTG CCTAGTGCTA GGTCCCCTAC
  TTGACAGTCC CCAAGTTATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50654657	NES14025686	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37986989					SNP	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50654657	NES14025686	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:24685886 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21501	CpG island 21501	within coordinates
Gm29824	predicted gene, 29824	1134 bp upstream
Rr675417	regulatory region 675417	within coordinates
Rr675418	regulatory region 675418	691 bp proximal
Rr675419	regulatory region 675419	1192 bp proximal
Rr675420	regulatory region 675420	1642 bp proximal
Tbx20	T-box 20	306 bp upstream
Tssr88515	transcription start site region 88515	1408 bp upstream
Tssr88516	transcription start site region 88516	299 bp upstream