rs37992066 SNP Detail

Summary

• ID
  rs37992066
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127920461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGTCCTG AGACCTTGGG
  CAGAATCATG AATGTCATTG GAGAACCTAT TGATGAGAGA GGTCCTATCA AAACCAAACA
  GTAAGTTTCT CTCACTGCAT TTGTGAACAT GGGAACCTTT TCTTGCAGTT GTACACATGG
  GGTAATAACT GGTAGTAAAG CAACATTTTC CTACAGTACT ACTTCCATTT CTGTTGTATT
  M
  AGTTATTGAA AATGAAGATA CAGAAGTTTG GATTGTTGAA AACTTGCTAC ATAGAACCCC
  CTGTTACTTT TTTTAAAGCT GTGTTACATT ATGGATTCTC TAAAATTTAC AGGTTTTTAT
  TTTCTTATTG TTATATAAAG AAACTTTGTT ATATTAAGTT CAGTAAAAGG AAAATATCAA
  AAAAGAGGAT TATTTGTTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50944587	NES14144977	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		A	C	C	A		C
ss323531635	CHEV_10_127521648	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37992066					SNP	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50944587	NES14144977	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127920461 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1b	ATP synthase F1 subunit beta	within coordinates
Cpgi2382	CpG island 2382	445 bp distal
Gm47438	predicted gene, 47438	1409 bp upstream
Gm55458	predicted gene, 55458	697 bp upstream
Mir677	microRNA 677	694 bp upstream
Rr402340	regulatory region 402340	1280 bp downstream
Rr441096	regulatory region 441096	1533 bp distal
Rr441097	regulatory region 441097	1309 bp distal
Rr441098	regulatory region 441098	1877 bp proximal
Rr441099	regulatory region 441099	1977 bp proximal
Snord59a	small nucleolar RNA, C/D box 59A	376 bp downstream
Tssr96319	transcription start site region 96319	1283 bp downstream
Tssr96320	transcription start site region 96320	654 bp downstream
Tssr96321	transcription start site region 96321	607 bp downstream
Tssr96322	transcription start site region 96322	918 bp upstream
Tssr96323	transcription start site region 96323	1439 bp upstream
Tssr96324	transcription start site region 96324	1540 bp upstream
Tssr96325	transcription start site region 96325	1700 bp upstream
Tssr96326	transcription start site region 96326	1717 bp upstream
Tssr96327	transcription start site region 96327	1733 bp upstream
Tssr96328	transcription start site region 96328	1780 bp upstream
Tssr99834	transcription start site region 99834	1611 bp upstream