rs37999608 SNP Detail

Summary

• ID
  rs37999608
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:33573427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCTTTTGT TTTTGTTTTG
  AGATGTGGTC TCTTTATGTA GCTCTGGCAG TCTTAGAGCC CACAGTGTAG ACCAGGCTGG
  TCTCCAACTC AGAGATCCTC CTGCCTCTGC CTCTTCAGTA TTGAGATTAA GGGCGTGTAC
  GATGGCTCCT GGCTGAGTAT GCCCTTCTGT TCCAGCTTCT TTGCCTTTGA AGTTTCTTCC
  R
  TGTTGTGATA GCAGTCCTTC AGTCCTGCTT CTTACACACA CGGACCTCAG CAGAGGACAA
  GGGAGGTGGC TCAGCAGGTA AAGCACTTGC ATGTAATTAT GAGGACTGAG TCCATATAAA
  AGTCAAGTGG TTATGGTAAT CTGCTTGTAA TCCTGCCCTT GGTGAGAGGA GACAGGATCT
  CTGGGGCAAA CTCAGTAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51697994	NES14750278	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37999608					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51697994	NES14750278	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:33573427 () rs orientation: forward

Symbol	Name	Function Class
Tssr45822	transcription start site region 45822	1771 bp upstream
Uvssa	UV stimulated scaffold protein A	within coordinates