rs38000120 SNP Detail

Summary

• ID
  rs38000120
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72346258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCGAGAGG TCAGTGAGAA
  ACTTCGATTT GCTTACTAGA AGGTTCTGGG TTTTTTTTTT TTTTTTTTTC CAGGAACACT
  CCAGGCATTT CTGCACCTTT CCCCCTCTCA TCGAAATAGA TACATCTTTA AATCTGCTCT
  GTTGTGGGTG GGGGGAAAGG CAACTCTCTG GTGGTAAAGC TGCAGCTGGA GAGCATCCGC
  W
  TCGCACTCAC TGACGCTGTT GAATTTTAAT TTAACTTTTC CTGCTTCCAC TACAAAACAG
  GGACTATTAG TAGTACTCAA TCAGTACGCC GTTAAGTTTA CATTATCATA TTTAAATATT
  AATTAGTATA TCCTGAATTA AAGCCAAAGA CCTTTTATAC TGTTACCTAT TTTATAGTGT
  TTATTATAGG GATTTTCAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50742788	NES14240560	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38000120					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50742788	NES14240560	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72346258 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22015	CpG island 22015	254 bp distal
Gm36948	predicted gene, 36948	1784 bp upstream
Mns1	meiosis-specific nuclear structural protein 1	within coordinates
Rr401506	regulatory region 401506	297 bp downstream
Rr682742	regulatory region 682742	431 bp distal
Rr682743	regulatory region 682743	within coordinates
Rr682744	regulatory region 682744	1225 bp proximal
Rr682745	regulatory region 682745	1855 bp proximal
Rr682746	regulatory region 682746	1930 bp proximal
Tssr85997	transcription start site region 85997	960 bp downstream
Tssr85998	transcription start site region 85998	443 bp downstream
Tssr85999	transcription start site region 85999	398 bp downstream
Tssr86000	transcription start site region 86000	378 bp downstream
Tssr86001	transcription start site region 86001	360 bp downstream
Tssr86002	transcription start site region 86002	130 bp downstream