rs38002197 SNP Detail

Summary

• ID
  rs38002197
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4092662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCTGGAC AGCTTTCTGC
  AGCATGTGCA ACTCTGTCAG CCTTCTGCCT ATCCCCATCT ACCAACCTCT CTAGTAGATT
  CCGTTAGTGG CCATCCTTAA CTCACCAACT TCTTTCTCCT GCCCAAAGAG CTTCGTTTGC
  TCCTTTGACC TTCGCTAGGA ATAGCCAGAA AACTGCGCTT TTGTGTTCTT TATGTCAGAG
  R
  TCTGAGGAGC TTCAAAAAGC GAAGAAAAAT CAAGTGAAGA GACAAAGTTG CAGTTGTATG
  TCAAAAACCT TAGTTGGTGG TTCCTCGCCT TTCTGACATG GACTCTAGTT CTTCAGCCCT
  TCAAAAATAA CAGCTGGAGA GATGGCCCCG ATGTTCAAGG CATTTCCAGA TCTTACACAG
  GACCCAAGTT CAGTTCCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50586306	NES13649862	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38002197					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50586306	NES13649862	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4092662 () rs orientation: forward

Symbol	Name	Function Class
Gstp2	glutathione S-transferase, pi 2	441 bp upstream
Rr357953	regulatory region 357953	339 bp proximal
Rr363269	regulatory region 363269	61 bp distal
Tssr157438	transcription start site region 157438	420 bp upstream
Tssr157439	transcription start site region 157439	389 bp upstream