rs38002648 SNP Detail

Summary

• ID
  rs38002648
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:15778492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAACAGCT GTGGGAACTG
  ACAGTTTACA GTTGGGATAA ATCGCATTAG TGAAGTATTT CAATTAGAGT GATATCGAAC
  TAAAAAACCA AAGTCATCCC TGAACAAATA AATTAGCACT TCAGTTCGTG AAGTGGAAGA
  TTTCAACAGC GCCTACCTGC CCATTGTTGT GCTGATAGTT CCTGATACTG CCCTTGTAGG
  R
  ATGGCGCATA TGTCCTGCTA GAGAAGGACA ATTAGTCAGG ATCAGTCTAT AACTAGGTAT
  TTGTTTCATT CCTGACCAAC AGCCAAATTT GGTCTCAGAT CAGCCTGAAA TGTCCCTAAT
  GGTGCATCAG AGAGCCTTCC TGCGGGGTCC TGGTACAGCC CACCAGCAGG TCAGCCAGAC
  GACACAGGGC TGGACTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss50640802	NES13617956	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs38002648					SNP	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50640802	NES13617956	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:15778492 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10648	CpG island 10648	920 bp proximal
Gm50348	predicted gene, 50348	1930 bp upstream
Gm54054	predicted gene, 54054	within coordinates
Rr406864	regulatory region 406864	within coordinates
Rr544631	regulatory region 544631	within coordinates
Rr544632	regulatory region 544632	909 bp proximal
Rr544633	regulatory region 544633	1319 bp proximal
Rr544634	regulatory region 544634	1941 bp proximal